PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G00200.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 831aa    MW: 90158.3 Da    PI: 5.0236
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G00200.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41e-075283127
                     --S---SGGGGTS.....--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartG.....tCkyGdrCkFaHgp 27
                     +kt+lC+ff+r        C++Gd+C++aH++
  ONIVA04G00200.2 52 WKTSLCSFFRRRAassadGCSHGDSCRYAHSE 83
                     8**********88*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.3E-124889IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.44E-64988IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3385184IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-55283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.70.3302.8E-5134182IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168743.806226831IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533353.54E-49228254IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.54E-49286389IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.54E-49448575IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1501.2E-62471575IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138472.0E-9515577IPR025714Methyltransferase domain
CDDcd024402.06E-7521575No hitNo description
Gene3DG3DSA:3.40.50.1501.2E-62714771IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.54E-49719831IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059589.7E-7724767IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300727759IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1501.2E-62806831IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001510Biological ProcessRNA methylation
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 831 aa     Download sequence    Send to blast
MEMEMEDNKA PSPPSPMESD VAGEKRKRED DASSSAVLAA ANNTGGAQHP MWKTSLCSFF  60
RRRAASSADG CSHGDSCRYA HSEEELRPRP DGTWDPTSDR AKKLRKVAAD EVEEEVVTID  120
DKALDKCLGI SYATAKKKKG MTVGFVTFEN IEQLKNAIEV LTENQSGGKE IKIADANRRS  180
HQKLHTEKPV SDNGVTTENG TSVDVPPGET SAPEAAISNK KSVRDAVTPL AHMSYNDQLE  240
HKKNSVAQIL KRLTRNARKA CPTGIPLPDW VFKSKEIGGL PCKLEGILES PVINGYRNKC  300
EFSVGFSLEG KKTVGFMLGN FREGVTAVEE PVDCPNVSEI SCKYALMFQD FLQSSSLPVW  360
NRVDNCGFWR QFTVREGRCR AQAVAQNAET QISEVMLIVQ VCSTGVDDAV MKDEFDKLTV  420
ALQQGAATCS PPLPLTTIVV QDHKGISNAA PADCPLIPLL VPKVDQSEGT VDKTRIHDHI  480
GNLWFSISPT AFFQVNTLAA ERLYTLAGDW ANLNSGTLLF DVCCGTGTIG LTLAHRVGMV  540
VGIEMNESAV SDAERNALIN GVSNCRFVCG KAEDVMGSLL TEYLGSPQQD IPVSEGAVSG  600
TVKDEEVIDS SKNSGENLDS SMQKNDNGKS QQLGDAPADS SSSAIDEIKG NSNDRVGNGL  660
EGSHDEYNEV AGEDIHGEAS LINESVDLKV SDCLEDRKTS DDGSSISNND VTAATACQFE  720
DIVAIVDPPR VGLHPTVIKA LRTHPRIRRL VYISCNPDSL VANAIELCTP SSEKQEKNKG  780
NRGWRTMSSA GLARQRTKSM PNSEPFVPKR AMAVDLFPHT SHCEMVMLFE R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1201560.0AK120156.1 Oryza sativa Japonica Group cDNA clone:J013030B09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636996.10.0PREDICTED: zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A0E0GX100.0A0A0E0GX10_ORYNI; Uncharacterized protein
STRINGLOC_Os04g01480.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.20.0C3H family protein